Menus take a while to refresh… it’s a mess. I only ran the loopt five times because if I run it much more than that, it bogs FIJI all the way down and I can’t even kill the macro easily. When running in batch mode, the time is really consistent at about 70 ms, but out of batch mode, it takes a long time and the time increases. It has a lot of duplications and closes all but the initial image every loop and spits out the time it took for that loop. I’ve written a simple script that takes an image, processes it with a color threshold and then repeats this 5 times. I do know that out of batch mode things run much slower than in batch mode, but it seems like there is a lot more to it, because before upgrading to Java 7/8 and Yosemite/El Capitan things used to be much better and faster. What’s been happening lately is that out of batch mode things gradually slow down over time. I am often processing 100s of images this way. A lot of macros that I use are what I call semi-automatic in that they cannot run in batch mode and often require user input to complete successfully. ![]() ![]() Been using ImageJ for quite a few years on my Macs and up until last year sometime things were usually running very smoothly.
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